PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154612.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 260aa    MW: 29311.7 Da    PI: 9.1899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k+F ++  L  H++ H
  XP_027154612.1  94 FVCQYCLKCFANSQALGGHQNAH 116
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEKGISNLSS PSCNNGEKKA YAEKPSVEKK LKLFGFELDP CRNGDHNDLK GLFENDESVN  60
SSSSTVSSGR DQILDQNLPK EKTPPREPAD DKKFVCQYCL KCFANSQALG GHQNAHKKER  120
MRKKRLQLQA RKASLSYYLQ PFQNRHSFNF YASSPLYHDP SFSAPHEFTI SEESQISFSS  180
RYDQDANMVN GSHVSRSWYA LPSAQAPFQQ DSASCKFTLT HVDKSRENRA VIKPSSPLPR  240
SKQNCRSVDL QLGLSLHSTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-13C2H2 family protein