PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154651.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 256aa    MW: 28354.2 Da    PI: 7.0641
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.3e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C +dC+l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q+
  XP_027154651.1   4 SCNGCRVLRKGCGEDCTLRPCLqwiktPESQANATVFLAKFYGRAGLVNLINAGPDHLRPEIFRSLLYEACGRIINPIYGSVGLLWSGNWQRCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_027154651.1  99 AVEAVLEGS 107
                     **9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MRMSCNGCRV LRKGCGEDCT LRPCLQWIKT PESQANATVF LAKFYGRAGL VNLINAGPDH  60
LRPEIFRSLL YEACGRIINP IYGSVGLLWS GNWQRCQAAV EAVLEGSPIM QVSTDDAAAG  120
GHPITPLKDC DIRHLSKKSN GIHRVRTRNR FKRSGFKSQV DSVPEFMNET TKFSITGWND  180
DEENDGSEEE LIKRAPSHDS FSVETVEPTL VNRAEQGRVV KSETIMVGED DDLVLDLTLG  240
VNPVVRTHLS AGGRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-79LBD family protein