PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154701.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 254aa    MW: 29139.9 Da    PI: 9.3013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.5e-201865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v ++G g+W+++a+  g++Rt+k+c++rw +yl
   XP_027154701.1 18 KGPWTPEEDKLLKEYVSLHGEGRWSSVAKSAGLRRTGKSCRLRWVNYL 65
                     79********************************************97 PP
2Myb_DNA-binding51.22.9e-1671115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
   XP_027154701.1  71 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115
                      6778******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVVGMMGWNV HEQGWWRKGP WTPEEDKLLK EYVSLHGEGR WSSVAKSAGL RRTGKSCRLR  60
WVNYLRPGLK RGHLTPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKG  120
KPSEKKDRRR LLKQKMEQDE TGTGAKASPL SEVTSERTLS PELQAQQEFS TLPLHPVMEN  180
PQLPVLYQEA DSWSDTNILM DGLSGWLWNF DDQNGKGVQA NNDCSKMTNK NQASFAPCSF  240
GFDNVDVQNG GYIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.18e-70MYB family protein