PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027156201.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 178aa MW: 20554 Da PI: 9.1537

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027156201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	19	72	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t++q+ Le+ F+ n++++ ++r +LA++lgL+ r+V +W+qN+Ra++k+ XP_027156201.1 19 KKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHQLGLPPRKVAIWYQNKRARWKN 72 5679************************************************95 PP
2	HD-ZIP_I/II	105.2	5e-34	18	109	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv+lLE+sF+ ++kL+p+r+++la++Lgl pr+va+W+qn+RAR+k+ +lE+d++aL+ ++++l ++nerL++ev +L++el++ XP_027156201.1 18 QKKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHQLGLPPRKVAIWYQNKRARWKNENLEVDHKALQLRLENLLADNERLQSEVGRLKQELHK 109 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MDYHHIQSSV RKNELKFQKK RLTQDQVSLL EKSFNFNNKL DPDRRSQLAH QLGLPPRKVA 60 IWYQNKRARW KNENLEVDHK ALQLRLENLL ADNERLQSEV GRLKQELHKA QEMLLSVNNT 120 PYSSLSSQIS SSCDEVGSSS LVHGSRNHLD KDFFACLIGG EGQFGNTNDQ EFFRSSIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	21	RKNELKFQKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-29	HD-ZIP family protein