PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027156249.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 124aa    MW: 14329.2 Da    PI: 9.5489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027156249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.41.3e-10237574128
             NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      n  t +gyW  t   k++++ +g++ g kk +++++g+++ g++t+W++ ++rl
  XP_027156249.1  23 DNVFTGDGYWTPTSA-KAIYT-GGQADGYKKEFIYHRGTEHPGKRTNWCIYQFRL 75 
                     455799******977.99999.99*****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MSKDSCEYST GEKWFFNTVA PNDNVFTGDG YWTPTSAKAI YTGGQADGYK KEFIYHRGTE  60
HPGKRTNWCI YQFRLNPDVY VANAIGNTVE YKISSIVACM VFRKEAVVQS NRRKRKREKE  120
LMSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RRKRKR
2112119RRKRKREK
3113120RRKRKREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-08NAC family protein