PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027156275.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 245aa    MW: 28202.1 Da    PI: 4.8372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027156275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
   XP_027156275.1 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding53.65.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE+ l++++++q+G++ W+tIa++++  Rt++++k++w+++l
   XP_027156275.1  67 RGKYTIEEEGLIIKLHEQYGNR-WSTIAAKLP-ARTDNDIKNHWHTHL 112
                      8999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MVRAPSVDKN GMKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LKPGVRRGKY TIEEEGLIIK LHEQYGNRWS TIAAKLPART DNDIKNHWHT HLKKRYKESP  120
ICEGSQHIDD ADQNEQSSAM FTSGSSTDQK TEVDPTTSAA DSLDAYTDIS SLSCDSTLFD  180
GADWAADDSN SSVESLTEPL ESFWTEPFAL DTSFNNWLPS MEEEFMHPFS SFLDDSFDWF  240
HEFNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-57MYB family protein