PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027156316.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26841.8 Da    PI: 7.1036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027156316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-183384556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +f++eq++ Le++F+++ ++    + +LAk lgL+ rqV++WFqN+Ra++k
  XP_027156316.1 33 KRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWK 84
                    47*************************************************9 PP
2HD-ZIP_I/II116.41.6e-3732122393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +r+s+eqvk+LE++F++e kLep +K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++
  XP_027156316.1  32 AKRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 122
                     69************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MEQTGYFEQE RWKPSNKHSP FPIPKRKRRN NAKRFSDEQV KSLESMFNRE AKLEPMNKMQ  60
LAKDLGLQPR QVSIWFQNKR ARWKSKKLEQ EYRVLKANFD ALCHQFEALK KENESLLEQL  120
HTLNGVLENS NKRQSSSKDS NENAEHTAPP KRDEHPERRE DDERTTKVNV DGVGVNEHFG  180
KEDQANFDIL TEQGESTSAS RKPWCNLVSD GLLDESCCPS SWWDFSDGLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-39HD-ZIP family protein