PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157035.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 1028aa MW: 117531 Da PI: 8.6112

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.6	4.1e-23	215	302	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++++leHnHel XP_027157035.1 215 QFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDIVLEHNHEL 302 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence
MSAKTVVVFG LGSFPIPQKK YSFFNWFFFA INMGTLLGIT LLVYVQVKKG WSWGFAIPAV 60 AMFCSIIILV AGFSKYHYQK PMGSAFTRFV QVIVASVRNH FKGVKFEPGV RLYEVPIENS 120 DIFGARKLLH TEQYRSSPIP TSREEQTFPP RSPPEKLPPK PPLPAPAINR YVVIEPFLVS 180 KMADSGSEVM DCSKLAEDGT PELGMEFNSE EDAYQFYNKY AFKMGFSVRK DYLNKDKDGV 240 TTSRRYSCCK EGVKRKYEGD VMPKRTRAPT KTGCGAKMVI VLFRGTMKYR VHDIVLEHNH 300 ELHIVQCAHM MPSQRKVSEA QGFQAEISED AGLSLKQSHE LMGKEAGGMG NVGYTREDLK 360 RYLRTRRERS LKYGEAGSML NYFQEQTLEN PSFFHAVQLD CEEQITNIFW ADAGMLIDYK 420 FFGDVVTFDT TYKTNKEYRP LGVFVGFNQH RQIVIFGAAL MYDETIDSFK WVFGTFLEAM 480 CGKRPSTILT DQDHAMAAAL SVVMPETFHG LCTFHIRRNF MKHLGNHYKE NSDLPYMFGA 540 CMYEFEEVEQ FNRVWEAMVK KHDLENNEWL SGLYRIRDKW ARCMMKERWT AGMRSTQLSE 600 SLNAAIKNHL KLDHDLVQFF RHFNRVVDEK RHNELIAEYE MRQKLPMVGL RQTPMLVHAS 660 ETYSPTVFVA FQNEYGESTA MVILRQQDAA MIVEFAVMRY DGGPERIVVF NRNDLSVRCS 720 CKKYENEGIL CGHALKVFDT VGIKIIPPEY IKRRWTKRAR AGDCFDRRRR EVVADPKIMI 780 STRYRELAPA MIKVATRAAM SEDTSKVAIT VISDLAKRVE LLLSESEEQP LQNQKNLNME 840 ERDKIEIVNE MGEAVVARGI KKRGGGKKSR VMRSWIDKFD RVKRKSRLSR TTQTTASESE 900 PTSVSIEEYM FMGCRSSTDS VSTHSMSQTV NGPPNAIAPN IGESETGHRL ANQGPPTSVP 960 TEWMHPRFSI FSKYNSVRDV LMEECAALLT HCDVDAYHVF APSPQGRNNT QGLQLRADVA 1020 APENEIDE

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence

MSAKTVVVFG LGSFPIPQKK YSFFNWFFFA INMGTLLGIT LLVYVQVKKG WSWGFAIPAV  60
AMFCSIIILV AGFSKYHYQK PMGSAFTRFV QVIVASVRNH FKGVKFEPGV RLYEVPIENS  120
DIFGARKLLH TEQYRSSPIP TSREEQTFPP RSPPEKLPPK PPLPAPAINR YVVIEPFLVS  180
KMADSGSEVM DCSKLAEDGT PELGMEFNSE EDAYQFYNKY AFKMGFSVRK DYLNKDKDGV  240
TTSRRYSCCK EGVKRKYEGD VMPKRTRAPT KTGCGAKMVI VLFRGTMKYR VHDIVLEHNH  300
ELHIVQCAHM MPSQRKVSEA QGFQAEISED AGLSLKQSHE LMGKEAGGMG NVGYTREDLK  360
RYLRTRRERS LKYGEAGSML NYFQEQTLEN PSFFHAVQLD CEEQITNIFW ADAGMLIDYK  420
FFGDVVTFDT TYKTNKEYRP LGVFVGFNQH RQIVIFGAAL MYDETIDSFK WVFGTFLEAM  480
CGKRPSTILT DQDHAMAAAL SVVMPETFHG LCTFHIRRNF MKHLGNHYKE NSDLPYMFGA  540
CMYEFEEVEQ FNRVWEAMVK KHDLENNEWL SGLYRIRDKW ARCMMKERWT AGMRSTQLSE  600
SLNAAIKNHL KLDHDLVQFF RHFNRVVDEK RHNELIAEYE MRQKLPMVGL RQTPMLVHAS  660
ETYSPTVFVA FQNEYGESTA MVILRQQDAA MIVEFAVMRY DGGPERIVVF NRNDLSVRCS  720
CKKYENEGIL CGHALKVFDT VGIKIIPPEY IKRRWTKRAR AGDCFDRRRR EVVADPKIMI  780
STRYRELAPA MIKVATRAAM SEDTSKVAIT VISDLAKRVE LLLSESEEQP LQNQKNLNME  840
ERDKIEIVNE MGEAVVARGI KKRGGGKKSR VMRSWIDKFD RVKRKSRLSR TTQTTASESE  900
PTSVSIEEYM FMGCRSSTDS VSTHSMSQTV NGPPNAIAPN IGESETGHRL ANQGPPTSVP  960
TEWMHPRFSI FSKYNSVRDV LMEECAALLT HCDVDAYHVF APSPQGRNNT QGLQLRADVA  1020
APENEIDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	752	770	KRRWTKRARAGDCFDRRRR
2	766	771	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein