PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027157188.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26830.6 Da    PI: 10.1673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027157188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox406.5e-131091402556
                     --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  25 psaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +  +++ eLA++lgL+ rqV vWFqNrRa+ k
  XP_027157188.1 109 LEDAQKIELAARLGLKPRQVEVWFQNRRARTK 140
                     6778999***********************98 PP
2HD-ZIP_I/II87.12.3e-281071752291
     HD-ZIP_I/II  22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     + Le  +K ela +Lgl+prqv+vWFqnrRARtk+kq+E+d+e  k+++d+l+een +L+ke ++L+ +l
  XP_027157188.1 107 TSLEDAQKIELAARLGLKPRQVEVWFQNRRARTKLKQTETDCELWKNHCDNLREENGKLKKEIDDLK-AL 175
                     379**************************************************************99.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MVDDDFCNTK LALGIGTSSG NSLPKPDKRA LSLDLSLVDE GQSSRNSEDN GGESRKKLRL  60
SKEQTAVLED SFKKHTTLNT HVTKFLKVKR IAIKCREKYM IRRDQITSLE DAQKIELAAR  120
LGLKPRQVEV WFQNRRARTK LKQTETDCEL WKNHCDNLRE ENGKLKKEID DLKALRAAFY  180
AQITNCVGIS VCPSCKKVQG VATKGSSSGD GKHERNATAA AASGDVVQSP KYKHSGLKIR  240
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460SRKKLRL
2135143RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-41HD-ZIP family protein