PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027157595.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20657.8 Da    PI: 10.3082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027157595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-222067148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+ien snrqvtfskRr g++KKA+EL+vL++aeva+i+ s   +++ 
  XP_027157595.1 20 KKIENLSNRQVTFSKRRVGLFKKASELCVLTGAEVAIIVHSLGKRVFA 67
                    68*************************************997766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MNNMMMKKKT TQGRKKIEIK KIENLSNRQV TFSKRRVGLF KKASELCVLT GAEVAIIVHS  60
LGKRVFAFGH PNIDAVINRY TTGSASSSSS SSSSSVADPK TPLGAHEIQQ HNRHYAKVSK  120
ELEVERKRKE LIEGSKLENG GSFWWDDPIE HMGLEELQQY KASLEELKKK LLMRADDLML  180
WL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-32M-type_MADS family protein