PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027157670.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43730.3 Da    PI: 6.9883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027157670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69e-151352544
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +  r++tf kR++g++ K +E  +LCd+++++ii+++ +
  XP_027157670.1 13 KEKSRHITFKKRKEGLMRKIHEFATLCDVDACMIIYGPGQ 52
                    56789********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MGRAKLNMEL IGKEKSRHIT FKKRKEGLMR KIHEFATLCD VDACMIIYGP GQESPSMESG  60
IWPENSDEIS RMIDIYQGKS KDSATRVFGL QDFFQDRNKR VEDELDKVRK KAVEIQYPTW  120
IDPMSHLSEM ELRKFAATVS DKIEVVDSRM EAICKGYDDD DHLHHHQHLL LHNHHNHSHI  180
QNRYLMTEGS QQQPTIDFTA AATSYNNNNN ARLSGLIQRG VELEQVSIGP APVNPVEMHV  240
PMAQAHYPAP ATIHDQEHHQ MHSINQNSMM MLLMNENEHH HHHHQVQLGG SASSIQCASF  300
KYYGSSSGGG GGGMVAGRGG GVLDNMVYNH PRPLARYYGP SVQPMVAPYM QYPHLMPNVS  360
PSLRENDYND MIHYRVMDQR PPRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-24M-type_MADS family protein