PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157888.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 751aa MW: 81697.7 Da PI: 10.1138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	27	57	4	35
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgR 35 W+t+E++ll+ avk++G ++W+t+ar+++ +R XP_027157888.1 27 WSTWEELLLASAVKRHGLKDWDTVARELQ-NR 57 *****************************.76 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MYYAYAIWVK ENIMSNAADV DTKELIWSTW EELLLASAVK RHGLKDWDTV ARELQNRHRH 60 RSSSSLPPTL FTAQICKNKF KHLRRRFTNN HRSASNNTAV TAGAGGVGGG GGESENNELP 120 CEAQSDDDDE NDGLGGGGGG GGGGGGGEGD CFPWLEELRK LRVAELKQEV HRYDLSIRSL 180 QMKVKTMEEE REKSPREDDD QHDDVKKPDL DEEVKQERSE NDKNDGKDPP EMVAGKFLSG 240 DNDENMSYNE SNSTESKRAG LKVEPKNEPA EVEPESESKP VGEEVSCNDS SASQERGKGG 300 GDSRELRDSV GEDESKEGTK ESSDVQSSAS LLTRKRRRRG VDGGGGGGEG GGDGVAVLSP 360 ATAPIKRERG VGGAVKSEPS AFGFLDKIRS QKHGSVFERR LESQKTEKYK STIRRHVDLE 420 TVQARIDDGS YTLCFMKFYK DLFLLFTNAI VFFPKSSPEA LAAQELRQLV LKELKNASSD 480 PSPQPSLLAK PKPKPEVERS DSLLAKHKST NPIIFSRKRS SISAKASSSS ANNAEKQRTN 540 EKAVINSKTL IKSPLSTSTN DDEDSSKLKL KEKPVTGARS MRRSSKGRPN VSKPEPTPNS 600 SNNKSSSSQQ PGSKDKGDKA EAAKGDKKKS EAIASTKKSG AADFLKRMKK NSPAKGTLVE 660 ALKSSRENNS NKGGRKDQPK KKVDERKDGP ARRSGGGGGG RKHVKEESSP LKKNAGRPPK 720 KGKDVVVTGG KRGREGGEGE GPSKRPKKRS R

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MYYAYAIWVK ENIMSNAADV DTKELIWSTW EELLLASAVK RHGLKDWDTV ARELQNRHRH  60
RSSSSLPPTL FTAQICKNKF KHLRRRFTNN HRSASNNTAV TAGAGGVGGG GGESENNELP  120
CEAQSDDDDE NDGLGGGGGG GGGGGGGEGD CFPWLEELRK LRVAELKQEV HRYDLSIRSL  180
QMKVKTMEEE REKSPREDDD QHDDVKKPDL DEEVKQERSE NDKNDGKDPP EMVAGKFLSG  240
DNDENMSYNE SNSTESKRAG LKVEPKNEPA EVEPESESKP VGEEVSCNDS SASQERGKGG  300
GDSRELRDSV GEDESKEGTK ESSDVQSSAS LLTRKRRRRG VDGGGGGGEG GGDGVAVLSP  360
ATAPIKRERG VGGAVKSEPS AFGFLDKIRS QKHGSVFERR LESQKTEKYK STIRRHVDLE  420
TVQARIDDGS YTLCFMKFYK DLFLLFTNAI VFFPKSSPEA LAAQELRQLV LKELKNASSD  480
PSPQPSLLAK PKPKPEVERS DSLLAKHKST NPIIFSRKRS SISAKASSSS ANNAEKQRTN  540
EKAVINSKTL IKSPLSTSTN DDEDSSKLKL KEKPVTGARS MRRSSKGRPN VSKPEPTPNS  600
SNNKSSSSQQ PGSKDKGDKA EAAKGDKKKS EAIASTKKSG AADFLKRMKK NSPAKGTLVE  660
ALKSSRENNS NKGGRKDQPK KKVDERKDGP ARRSGGGGGG RKHVKEESSP LKKNAGRPPK  720
KGKDVVVTGG KRGREGGEGE GPSKRPKKRS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	338	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	5e-48	MYB_related family protein