PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157999.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 649aa MW: 74971 Da PI: 8.7425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.1	2.8e-13	55	139	1	85
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY ++k+vGF +r + +kk ++g +t +++vC++eg+r+++ + +++++ + tr+gC a++ v+ +kd + v+ +leH XP_027157999.1 55 EFYLCHSKMVGFGIRERDEKKD-QKGIVTYKRWVCNREGFRNSKWLNlVDRKKEAKRLTRVGCLATIIVQWNKDIQKGVNPADLEH 139 69************999888.7777************99986778888999*************99999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MEEMTVHINE LVQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQLLTFDSI EDAREFYLCH 60 SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKEAKR LTRVGCLATI 120 IVQWNKDIQK GVNPADLEHA ILMHGVGIRI PQIVDLQAYQ AGGHNKMGYT EKDLRNVVDQ 180 FHRNALEVGD ASQVLAYLDG RANGEPNFFY KYAVDVEKRL IRLFWTDSQS RLDYQYFGDV 240 LVFDSTYRTN AYRKPLVILA GVNHHYVTTI FGCALIADET EDTYKWVLET FLEAMEKNAP 300 ISVVTDRDGA MRNAIKAVIP YTRHRLYAWH LKRNVVTNTN KGFVLDFGVA MDMICSHEEF 360 EKRWHLLVEK HNLRDNQWVV DLYNKREKWV AAFLRGHFFA VGQNEHKEEC IMSQSSPVLI 420 THLRELEGNA ASIFTRKIFL KVRDEISAEA SLRLVSVVDQ DKVKLYTFTE YLHQICSWQV 480 ELDKAERTII CSCKKLESDG IPCSHAFAVM KNEDMDEIPK SCILFRWTQQ AKPGEKNIYS 540 IQLEDSAIQA ARFGALCALS NQMCFYAVKT KQGYDEAREC IINSASHFKN LWVNDAPLVH 600 KVKKKDNMMD GSIKRSDFDV REPIVVATKG QKAKHSTHKR KRRQCKNCK

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MEEMTVHINE LVQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQLLTFDSI EDAREFYLCH  60
SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKEAKR LTRVGCLATI  120
IVQWNKDIQK GVNPADLEHA ILMHGVGIRI PQIVDLQAYQ AGGHNKMGYT EKDLRNVVDQ  180
FHRNALEVGD ASQVLAYLDG RANGEPNFFY KYAVDVEKRL IRLFWTDSQS RLDYQYFGDV  240
LVFDSTYRTN AYRKPLVILA GVNHHYVTTI FGCALIADET EDTYKWVLET FLEAMEKNAP  300
ISVVTDRDGA MRNAIKAVIP YTRHRLYAWH LKRNVVTNTN KGFVLDFGVA MDMICSHEEF  360
EKRWHLLVEK HNLRDNQWVV DLYNKREKWV AAFLRGHFFA VGQNEHKEEC IMSQSSPVLI  420
THLRELEGNA ASIFTRKIFL KVRDEISAEA SLRLVSVVDQ DKVKLYTFTE YLHQICSWQV  480
ELDKAERTII CSCKKLESDG IPCSHAFAVM KNEDMDEIPK SCILFRWTQQ AKPGEKNIYS  540
IQLEDSAIQA ARFGALCALS NQMCFYAVKT KQGYDEAREC IINSASHFKN LWVNDAPLVH  600
KVKKKDNMMD GSIKRSDFDV REPIVVATKG QKAKHSTHKR KRRQCKNCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-79	FAR1 family protein