PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158213.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 821aa    MW: 88529.4 Da    PI: 5.5412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-20122177156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+ q++eLe+ F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  XP_027158213.1 122 RKKYHRHTPFQIQELEASFKENPHPDEKARLELGRRLNLESKQVKFWFQNRRTQMK 177
                     7999*************************************************999 PP
2START170.11.5e-533295531206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ + p+W++s     e +n +e+ + f++  +     + +ea +a+g v+ +++ lve+l+d + +W+e +     +a+t+
  XP_027158213.1 329 ELAVAAMDELLKLAQIDNPLWFRSLdgfsETLNLEEYNRVFPPCVGtkpsnFVTEATKATGTVIINSTSLVEILMDPN-RWTELFScmigRASTI 422
                     57899********************999999999999999988655899999**************************.9***9999999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+++g      galqlm ae+q+lsplvp R++ f+R+++q+ +g w++vdvSvds +  p+ + +  +++lpSg+++++++ng+ kv+wveh+
  XP_027158213.1 423 DVVTDGtggtrnGALQLMHAEFQVLSPLVPvREVKFLRFCKQHAEGFWAVVDVSVDSIRGGPSAQIFSDCRRLPSGCIVQDMPNGYAKVIWVEHM 517
                     **************************************************************8888889************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h+ +r+l++sgl +ga++wvatl+rqce+
  XP_027158213.1 518 EYDDSNVHQSYRPLLRSGLGFGAQKWVATLERQCEC 553
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    
MSFGGFIGGG SSGGGGGDAG LMMADNLYST IPTSALAHTQ PHMVSPPPMV QPIFNSSPLS  60
LAVKPKMEGA GDMGLIGENF GPGDADKSKE EEYESRSGSD NIEGASGDDQ DTQGDKASSS  120
GRKKYHRHTP FQIQELEASF KENPHPDEKA RLELGRRLNL ESKQVKFWFQ NRRTQMKTQM  180
ERHENNMLKQ ENDKLRIENI AMKEAMRNPV CSNCGGAAAL GEISIEEHHL RIENARLRDE  240
LSRICGLANK FLGRPLSSLA SPIAPGNSDL ELAVGRNAFA ALSSVGTPVP MGLDFTSAVT  300
NPLPILPTIR SSMGMTSFDV SIDKSMYLEL AVAAMDELLK LAQIDNPLWF RSLDGFSETL  360
NLEEYNRVFP PCVGTKPSNF VTEATKATGT VIINSTSLVE ILMDPNRWTE LFSCMIGRAS  420
TIDVVTDGTG GTRNGALQLM HAEFQVLSPL VPVREVKFLR FCKQHAEGFW AVVDVSVDSI  480
RGGPSAQIFS DCRRLPSGCI VQDMPNGYAK VIWVEHMEYD DSNVHQSYRP LLRSGLGFGA  540
QKWVATLERQ CECLAVITSS TVPGGDHGVI SPSGRRSIAK LAQRMTHNFC AGVCATVYKW  600
EVVQVGNADE AKLVMRKSMG NPGEPPGVVL SATSTVWMPV SEQRLFDFLR NEQTRSQWDV  660
LSHDGAMQQM FHIAKGQDLG NSISLLRSSA TSPNSNQNGM LILQETSTDV SGSLIVYAAV  720
DIPAMNVVMS GGDSSCVVLL PSGFSVVPDC YPDSAGPNSS SGNFAKEATA GGGSNGCLLT  780
VGFQILVNSL PASKLTLESI DTVNALIGRT LQGIRSALEC S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein