PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158215.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 755aa    MW: 81973.8 Da    PI: 5.3473
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-2056111156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+ q++eLe+ F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  XP_027158215.1  56 RKKYHRHTPFQIQELEASFKENPHPDEKARLELGRRLNLESKQVKFWFQNRRTQMK 111
                     7999*************************************************999 PP
2START170.31.3e-532634871206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ + p+W++s     e +n +e+ + f++  +     + +ea +a+g v+ +++ lve+l+d + +W+e +     +a+t+
  XP_027158215.1 263 ELAVAAMDELLKLAQIDNPLWFRSLdgfsETLNLEEYNRVFPPCVGtkpsnFVTEATKATGTVIINSTSLVEILMDPN-RWTELFScmigRASTI 356
                     57899********************999999999999999988655899999**************************.9***9999999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+++g      galqlm ae+q+lsplvp R++ f+R+++q+ +g w++vdvSvds +  p+ + +  +++lpSg+++++++ng+ kv+wveh+
  XP_027158215.1 357 DVVTDGtggtrnGALQLMHAEFQVLSPLVPvREVKFLRFCKQHAEGFWAVVDVSVDSIRGGPSAQIFSDCRRLPSGCIVQDMPNGYAKVIWVEHM 451
                     **************************************************************8888889************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h+ +r+l++sgl +ga++wvatl+rqce+
  XP_027158215.1 452 EYDDSNVHQSYRPLLRSGLGFGAQKWVATLERQCEC 487
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MEGAGDMGLI GENFGPGDAD KSKEEEYESR SGSDNIEGAS GDDQDTQGDK ASSSGRKKYH  60
RHTPFQIQEL EASFKENPHP DEKARLELGR RLNLESKQVK FWFQNRRTQM KTQMERHENN  120
MLKQENDKLR IENIAMKEAM RNPVCSNCGG AAALGEISIE EHHLRIENAR LRDELSRICG  180
LANKFLGRPL SSLASPIAPG NSDLELAVGR NAFAALSSVG TPVPMGLDFT SAVTNPLPIL  240
PTIRSSMGMT SFDVSIDKSM YLELAVAAMD ELLKLAQIDN PLWFRSLDGF SETLNLEEYN  300
RVFPPCVGTK PSNFVTEATK ATGTVIINST SLVEILMDPN RWTELFSCMI GRASTIDVVT  360
DGTGGTRNGA LQLMHAEFQV LSPLVPVREV KFLRFCKQHA EGFWAVVDVS VDSIRGGPSA  420
QIFSDCRRLP SGCIVQDMPN GYAKVIWVEH MEYDDSNVHQ SYRPLLRSGL GFGAQKWVAT  480
LERQCECLAV ITSSTVPGGD HGVISPSGRR SIAKLAQRMT HNFCAGVCAT VYKWEVVQVG  540
NADEAKLVMR KSMGNPGEPP GVVLSATSTV WMPVSEQRLF DFLRNEQTRS QWDVLSHDGA  600
MQQMFHIAKG QDLGNSISLL RSSATSPNSN QNGMLILQET STDVSGSLIV YAAVDIPAMN  660
VVMSGGDSSC VVLLPSGFSV VPDCYPDSAG PNSSSGNFAK EATAGGGSNG CLLTVGFQIL  720
VNSLPASKLT LESIDTVNAL IGRTLQGIRS ALECS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein