PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158306.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34725.1 Da PI: 9.1164

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.8e-18	138	192	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027158306.1 138 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 192 788899***********************************************98 PP
2	HD-ZIP_I/II	126.8	9.2e-41	138	227	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l XP_027158306.1 138 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVNELR-AL 227 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MGEKDDGLRL SLSLGCGDDE KREKISQSPQ PFPLKLMRST LPFVQQQNQQ QLLLLQKSSF 60 LADAFPSSSE RNAAEPRSSL RGIDVNRPAT VIDCDEEVMV SSPNSTVSSV SGKRSEREEN 120 EAERGSSSLE DDGGDAARKK LRLSKEQAAL LEETFKEHNT LNPKQKLALA KQLNLRPRQV 180 EVWFQNRRAR TKLKQTEVDC EYLKRCCENL TEENRRLQKE VNELRALKLS PQFYMNMNPP 240 TTLTMCPQCE RVAVSASSSS SAAASTSLAA TSTGIPRQQN PLTAAKQHSM PKNPWAAIFP 300 NQSHGVRQPR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	195	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	6e-75	HD-ZIP family protein