PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158338.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 172aa    MW: 20396.3 Da    PI: 10.1739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69.1e-152258339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i +++ r+  + kRr+ ++KKA+ELS+LCd++va+i+
  XP_027158338.1 22 IPSEITRKSILNKRRESLFKKANELSTLCDVNVALIV 58
                    66788899999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MAWKLTQNIF NMTRKKIRHV EIPSEITRKS ILNKRRESLF KKANELSTLC DVNVALIVQD  60
LKQNDEVLWP SHEDVEEKVR RFINMPDFER YSKSKTQANY LSDLVENKYQ NVAKFSKKND  120
QRESGNYIFK LSNQSITAEK FDMRQTNGLI NLFSIVTNML GERKQEFDKL KQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-12M-type_MADS family protein