PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158482.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 743aa    MW: 83067.8 Da    PI: 5.24
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.92.5e-1153697401373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d++ a++ L+++++++sp+gd+ qRla+ f+++L+arla++++e+y+al++++ s    +e+l+a++++  ++P+ k+s 
  XP_027158482.1 369 LRTLLISCAQSVANDDQRTAREQLKQIRQHSSPSGDACQRLASIFANGLEARLAGTGTEIYAALASKRIS---AAEKLKAYQVYLSACPFKKISI 460
                     6789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I+  ++ ++++Hi+Df+i +G+QWp L++ L++Rp+gpp+lRiTg+++p++g   +e++eetg+rLa+++e+++vpfe+++++++++e+
  XP_027158482.1 461 FFANKMIVHKASDAKTLHIVDFGILYGFQWPILIHHLSTRPGGPPKLRITGIERPQPGfrPSERVEETGRRLARYCERFHVPFEYQAIAEQNWEA 555
                     ***************************************************************************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++ +gE+laVn  +q  +l+de+v+++s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd ++a+lpre+ +r+
  XP_027158482.1 556 IKVEDLNIAEGEVLAVNALFQFNNLFDETVKVDSPRDAVLRLIRKMNPDIFVNAVTNGSYSAPFFVTRFREALFHYSSLFDIFDATLPREDLQRM 650
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++E++++gre+ n++acegaer+ r et+++W+ r ++aGFkp+pl+++  ++ +  ++  + + +  +e+  ++++gWk+r L+s S+W
  XP_027158482.1 651 NLEQQFFGREAINIIACEGAERVVRPETYKQWQVRHTRAGFKPLPLNQELLEKLRGKVKGGYHKDFVFDEDGSWMLQGWKGRILYSSSCW 740
                     ************************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MDPRFNQLPD SVNGFKFEDE IVLPTFEESP NLLNGFKFGD NALDLNFVDT SSFSPSPGTG  60
NLPAFSSGSS EVDSPDDGDS DPVLRYLNQI LLEENMEEKP SMFPDPLALR AAEKSLYDAL  120
GQKYPPSPYR VDQNAESPDS LFGSASEHSA NSSSTSSSSV EPGEYKSAAG QSYSLDYSFP  180
LSSENSSNLL FNSVSSFGNH MNGQLNSLAY NNPIPNIFSD SESILQFKKG MEEASKFLPS  240
GNQLIIDLDK YALPPKSEEI FLESKVKEEK DDGDHSPNGS RGRKHLHRQE SDIEQQRSSK  300
QSAVYDEEAE LSEMFDRVLL CTDLKWCHAA AQLHDEANKT GQQNGLPDGT GGGKTRSRNQ  360
GSKSEAVDLR TLLISCAQSV ANDDQRTARE QLKQIRQHSS PSGDACQRLA SIFANGLEAR  420
LAGTGTEIYA ALASKRISAA EKLKAYQVYL SACPFKKISI FFANKMIVHK ASDAKTLHIV  480
DFGILYGFQW PILIHHLSTR PGGPPKLRIT GIERPQPGFR PSERVEETGR RLARYCERFH  540
VPFEYQAIAE QNWEAIKVED LNIAEGEVLA VNALFQFNNL FDETVKVDSP RDAVLRLIRK  600
MNPDIFVNAV TNGSYSAPFF VTRFREALFH YSSLFDIFDA TLPREDLQRM NLEQQFFGRE  660
AINIIACEGA ERVVRPETYK QWQVRHTRAG FKPLPLNQEL LEKLRGKVKG GYHKDFVFDE  720
DGSWMLQGWK GRILYSSSCW SPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein