PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158601.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 286aa    MW: 31651 Da    PI: 4.3841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-11110155555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  ++P +     kK++K ++L  A+ Y+k+Lq
  XP_027158601.1 110 HILAERKRREQLSQGFVALSAIVPGL-----KKMDKTSVLGDAIIYLKHLQ 155
                     8899**********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEDPFVDDQC DIMDYFDEDF TAGLGEDPES NLSAVSVMEA PPISIEIPAP QQSSNRCNSA  60
ATLENMPNHH NQPIILTFGN PSTPEINPQP LNLEDDRVVP EVLTSHDSCH ILAERKRREQ  120
LSQGFVALSA IVPGLKKMDK TSVLGDAIIY LKHLQERVKT LEEQVAQQTM QSVVLVKRSQ  180
LLVEDEGSSD DTGGPDEQPL PEIEAKMCNR NILLRIHCEK HKGVLVQILS EVEKHNLAVM  240
NTCVAPFGNL ALDITIITEM EKEFSLTIQE LVKILGSALH RGTVAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein