PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158737.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 255aa MW: 29185.7 Da PI: 9.752

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.1	2e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK ELS+LC+++++ ii+s+ XP_027158737.1 10 FITNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIIYSP 50 89**************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVGELSTLCG IDACAIIYSP YESQPEVWPN 60 TMGVQRVISQ FKRMPEMEQS KKMVNQESFI RQRIAKANEQ LKKQHKDNRE KEMTEVMYQC 120 LTGKGMQNMS MPDLNDLGWL IDQNLKEIYK RIDSHKKMAP HHQQISQPQA ATAPPPPAHP 180 PVTLAANDML AGGVQVQEQK PSVDLTMDAA VHRPQWFTDW MNNPAGENMG FGHGDEMMMQ 240 FHDNHNPMWS SAFFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLAFITNDSARKATFKKRK
2	22	26	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-66	M-type_MADS family protein