PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027159621.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 22951.4 Da PI: 9.2876

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027159621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.7	8.2e-30	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ XP_027159621.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFG 58 8**********************************************95 PP
2	K-box	65.3	2.1e-22	79	154	6	81
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 ++ +e+++++l+qe a + k+ie L+ ++R+llGe+L s++++eLqqLe+qLe+s++ iR++K+++l ++ ++l XP_027159621.1 79 NNPSAEQNMQQLKQETASMVKKIELLEASKRKLLGEGLVSCTVEELQQLERQLERSVNCIRARKEKVLEAENDKLL 154 344899***************************************************************9988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFGSS 60 SMKEIIERYQ KHAKDVRANN PSAEQNMQQL KQETASMVKK IELLEASKRK LLGEGLVSCT 120 VEELQQLERQ LERSVNCIRA RKEKVLEAEN DKLLEKCGAE PPQTSKENTE IVPCTESSEV 180 SDVETGLFIG PPERRNKLVL KN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-72	MIKC_MADS family protein