PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027159636.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 193aa MW: 20883.9 Da PI: 8.1353

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027159636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.3	9.2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA+ r+ +Pv+G+vg+++++++ql+q+ XP_027159636.1 2 SCNGCRILRKGCNENCILRQSLqgigsPQAQANATVFVAKFFGRAGLMSFLSAVPEPQRPALFQSLLYEACGRTVNPVSGVVGLLWTGNWQLCQS 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_027159636.1 97 AVETVLR 103 *998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MSCNGCRILR KGCNENCILR QSLQGIGSPQ AQANATVFVA KFFGRAGLMS FLSAVPEPQR 60 PALFQSLLYE ACGRTVNPVS GVVGLLWTGN WQLCQSAVET VLRGGVLRPM MNLPSEPQEA 120 VDHDDASEAS RLCLNLSAAL PARVTAGGRV KRRSATPEES ETSTMESCYD YTASNCYQNL 180 KGGEGTKLLR LFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	3e-63	LBD family protein