PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160026.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 835aa    MW: 90576 Da    PI: 6.4686
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21130185156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_027160026.1 130 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 185
                     688999***********************************************999 PP
2START202.71.6e-633435701206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W +s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    + +t+
  XP_027160026.1 343 ELALAAMNELVKLAQTDEPLWLRSLeggrEILNHEEYMRTFTPCIGvkptgFVTEASRETGMVIINSLALVETLMDAN-KWAEMFPcmiaRTSTT 436
                     5899**************************************99889*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                     +vis g      galqlm  elq+lsplvp R++ f+R+++q+ +g+w++vdvSvds ++ +    s+ + R+++lpSg+l+e+++ng+skvtwv
  XP_027160026.1 437 DVISGGmggtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDSIRETSGggaSPTFPRSRRLPSGCLVEDMPNGYSKVTWV 531
                     ************************************************************999999***************************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     eh++++++++h+l+r+l++ g+ +g ++w atlqrqce+
  XP_027160026.1 532 EHAEYDESMIHQLYRPLIGAGMGFGSQRWIATLQRQCEC 570
                     *************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MNFGGFLDNN SVGGGGAKIV ADIPYSDSSN HNNNNVNSSN TNMPASAAIA QPRLATQSLS  60
KSMFSSPGLS LALQTSLEGQ EVRRMSENYE SNMNIGRRSR DEEHESRSGS DNMEGGSGDD  120
QDAADKPPRK KRYHRHTPQQ IQELEALFKE CPHPDEKQRL ELSKRLCLET RQVKFWFQNR  180
RTQMKTQLER HENSILRQEN DKLRAENMSI REAMRNPICT NCGGPAIIGE VSLEEQHLRI  240
ENARLKDELD RVCALAGKFL GRPISSSAAS MAPPLPNSSL ELGVGGNGFA SLSTVPATLP  300
LGPPDFGVGI GNPLSLMAGP TKAAATTAGT GIERSLEKSM YLELALAAMN ELVKLAQTDE  360
PLWLRSLEGG REILNHEEYM RTFTPCIGVK PTGFVTEASR ETGMVIINSL ALVETLMDAN  420
KWAEMFPCMI ARTSTTDVIS GGMGGTRNGA LQLMHGELQV LSPLVPVREV NFLRFCKQHA  480
EGVWAVVDVS VDSIRETSGG GASPTFPRSR RLPSGCLVED MPNGYSKVTW VEHAEYDESM  540
IHQLYRPLIG AGMGFGSQRW IATLQRQCEC LAILMSSSVA PRDHTAITAS GRRSMLKLAQ  600
RMTDNFCAGV CASTVHKWNK LCAGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS  660
PQRLFDFLRD ERLRSEWDIL SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL  720
QETCIDAAGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPLPNGLTN  780
GPTSHRVSGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein