PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160327.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28083.2 Da    PI: 7.128
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.6e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    kri+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey 
  XP_027160327.1  9 KRIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYG 58
                    79**********************************************95 PP
2K-box43.41.4e-15871681495
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     +++ ++ +a L +ei++   e+Rhl+Ge+L  Ls+++L +Le+ +e +l++i ++K+ ll+e+  +l++k   ++e+++ L 
  XP_027160327.1  87 TQRENHTHAMLAEEIKEKTAELRHLKGEELVGLSMEDLVKLEKLVEAGLSRIAKTKEALLKEENAKLRQKVAGTSEDETPLL 168
                     577788999999*****9****************************************************998888877665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MVRQRIQIKR IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFEYGSS  60
SMMQVIERHR LCSEDIGRQD KHPPHLTQRE NHTHAMLAEE IKEKTAELRH LKGEELVGLS  120
MEDLVKLEKL VEAGLSRIAK TKEALLKEEN AKLRQKVAGT SEDETPLLEQ GISSESVTRL  180
SDQVGSCPQD LNNSDTFLQL GEDEIAVAED RIYNLSIAGS MIPRNCSLCC IIFLKKNNMH  240
VCQACSSLST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-58MIKC_MADS family protein