PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160434.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 212aa    MW: 23444.8 Da    PI: 7.8538
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY240.14.7e-74181765170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                       +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsv  +++  ll++ +hl++s+  +  lleel+++  nl  n+ + +++     
  XP_027160434.1  18 PPTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSV--NMRGLLLPSANHLGHSFFSPqnLLEELRNTPPNLLINQPNPNESL---- 106
                     5689***************************************5..567789**********97654588888888888877766554432.... PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++    +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_027160434.1 107 ---MPVRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176
                     ...45567889***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSSSAFATP DHHHLAAPPT EQLCYVHCNF CDTVLAVSVP CTSLFKTVTV RCGHCTNLLS  60
VNMRGLLLPS ANHLGHSFFS PQNLLEELRN TPPNLLINQP NPNESLMPVR GVDELPKPPV  120
ANRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDQ  180
PVKKSNVCQQ EGEDVLMKDG FLAPANVGVS PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-92YABBY family protein