PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160782.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 188aa    MW: 20310.1 Da    PI: 6.6549
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.25e-375102197
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+++pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l+++l
  XP_027160782.1   5 PCAACKQMRRHCSAKkCPFSPYFPPNEPLRFASVHRVFGASNVSKMLAEVPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESLQQQL 99 
                     7***********8655******************************************************************************9 PP

          DUF260  95 all 97 
                     +++
  XP_027160782.1 100 NSA 102
                     976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MNPQPCAACK QMRRHCSAKK CPFSPYFPPN EPLRFASVHR VFGASNVSKM LAEVPESLRA  60
EVAISLVYEA DARLRDPVYG CTAEISALQR QVESLQQQLN SAWDELLKYK NPHHEADIFN  120
AEPPPSHDVA LLPSVATTAA FPPPPSPTVL LVPPPPPTTS GSLLLSSSAS SNQYCPLSAA  180
ADFSTISN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-44LBD family protein