PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027160883.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 734aa MW: 78665.5 Da PI: 6.5575

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027160883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	312	332	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_027160883.1 312 PCPDFRK-GACRRGDACEYAHG 332 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MCVGPERSNS SSSSAAAQSP VDIKTNNTKD MNKLSVVTED CFSSLLELAA DNDVDGFKQM 60 VERDPSAIDE AGLWLVRKKG TKQIVREERT PLMVAAAYGS VDVLKLIVSL PEVDLNRACG 120 PDKCTALHCA TAGGAVNAVD VVKVLLSAGA DPNIEDANGL RPVDVIVVPP KLATAKLALE 180 ELLVNNPSDG SFGNCNLSIS VTTSNGSSPI LSSSPENGSP CSPSELVSSP ITSKFIGAPA 240 SSVSEKKEYP IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR 300 RDPRKFHYSC VPCPDFRKGA CRRGDACEYA HGVFECWLHP AQYRTRLCKD GTSCSRRVCF 360 FAHTAEELRP LYVSTGSAVP SPRSAASAAG VMDMAAALNL LPGSPSSHPV MSPSAFNQPM 420 SPTANGMSHS SGAWTQPIVP ALHLPGSNLQ SSRLRSSLSA RDIPPAEFNM LQDFDAQQLV 480 LNDLACFSQS RPNSLSLNHS GRSKTLTPSN LEELFSAEIN SSPRYADPAA GGVFSPSHKS 540 AVLNQFQQQQ SMLSPINTNV FSPKNVEHPL LQASFGVSSP GRMSPRSVEP ISPMSARLSA 600 LAQREKHYQQ LRSLSSRDLG SKNVSVIGSP VNSWTKFGGS PSGKVDWSVN GDEIGQMKRS 660 SSFEANNNGE EPDLSWVQSL VKESSPEMKD KLAAPLSGAA PSGEGLKSSS QIDSIDHSVL 720 GAWLEQMQLD QLVV

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MCVGPERSNS SSSSAAAQSP VDIKTNNTKD MNKLSVVTED CFSSLLELAA DNDVDGFKQM  60
VERDPSAIDE AGLWLVRKKG TKQIVREERT PLMVAAAYGS VDVLKLIVSL PEVDLNRACG  120
PDKCTALHCA TAGGAVNAVD VVKVLLSAGA DPNIEDANGL RPVDVIVVPP KLATAKLALE  180
ELLVNNPSDG SFGNCNLSIS VTTSNGSSPI LSSSPENGSP CSPSELVSSP ITSKFIGAPA  240
SSVSEKKEYP IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR  300
RDPRKFHYSC VPCPDFRKGA CRRGDACEYA HGVFECWLHP AQYRTRLCKD GTSCSRRVCF  360
FAHTAEELRP LYVSTGSAVP SPRSAASAAG VMDMAAALNL LPGSPSSHPV MSPSAFNQPM  420
SPTANGMSHS SGAWTQPIVP ALHLPGSNLQ SSRLRSSLSA RDIPPAEFNM LQDFDAQQLV  480
LNDLACFSQS RPNSLSLNHS GRSKTLTPSN LEELFSAEIN SSPRYADPAA GGVFSPSHKS  540
AVLNQFQQQQ SMLSPINTNV FSPKNVEHPL LQASFGVSSP GRMSPRSVEP ISPMSARLSA  600
LAQREKHYQQ LRSLSSRDLG SKNVSVIGSP VNSWTKFGGS PSGKVDWSVN GDEIGQMKRS  660
SSFEANNNGE EPDLSWVQSL VKESSPEMKD KLAAPLSGAA PSGEGLKSSS QIDSIDHSVL  720
GAWLEQMQLD QLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein