PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027160914.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27837.4 Da PI: 10.118

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027160914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.9e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_027160914.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP
2	K-box	112.7	3.6e-37	94	189	5	100
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ s +ea+a+++qqe++kL+++i+nLq+++R++lGe+L+sL+l++L++Le+++e++++++RskKnell+++ie +qk+e +l+++n++Lr+k++ XP_027160914.1 94 NTGSISEANAQHYQQEASKLRAQISNLQNSNRNMLGESLGSLNLRDLKNLESKVERGISRVRSKKNELLFAEIEFMQKREVDLHSNNQYLRSKIA 188 444599***************************************************************************************98 PP K-box 100 e 100 e XP_027160914.1 189 E 189 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MSCQSDPSRE TSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKE TIKRYKKVNS DSANTGSISE ANAQHYQQEA SKLRAQISNL 120 QNSNRNMLGE SLGSLNLRDL KNLESKVERG ISRVRSKKNE LLFAEIEFMQ KREVDLHSNN 180 QYLRSKIAET ERAQHDMNLM PGSSDYELVS AQPFDARTFL QVNGLQLNNH YPRQEQRPLQ 240 LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-117	MIKC_MADS family protein