PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027161168.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24947.5 Da    PI: 9.1625
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027161168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027161168.1 10 RIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGKLYEFSS 59
                    8***********************************************96 PP
2K-box68.62.1e-2382170997
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       e+  ++l+ e+ ++ + ie L+ +qR+llG+dL+s sl+eLqq+ +qLe+sl+++R +K++l++e+ie+l+ ke  l een +L++k
  XP_027161168.1  82 DIEKYVQELKLEAINMANTIEFLEASQRKLLGQDLGSSSLEELQQIDSQLERSLTNVRGRKTQLFKEEIERLRAKEMLLLEENARLSQK 170
                     346668999******************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRGKIQMRR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGKLYEFSSS  60
NMQKTIDKYR GCVKEDQRSD QDIEKYVQEL KLEAINMANT IEFLEASQRK LLGQDLGSSS  120
LEELQQIDSQ LERSLTNVRG RKTQLFKEEI ERLRAKEMLL LEENARLSQK CGLESWHAPA  180
KRKEIGSCSQ STQSSEVETG LFIGLPETRV LEYRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-83MIKC_MADS family protein