PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161231.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 614aa MW: 64868.4 Da PI: 6.5454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	236	279	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027161231.1 236 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 279 69**************************************9985 PP
2	QLQ	52.5	1.4e-18	173	205	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027161231.1 173 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 205 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS 60 QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV 120 TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG LGMAAASAAL GFPFTAVQWK 180 ELERQAMIYK YMIASVPVPS DLLLPADPTA APSVLLGGSH GGGGSIYNLR YGNRDLEPGR 240 CKRTDGKKWR CSRDVAPHQK YCERHMHRGR PRSRKPVEQL QSSSVSPDDN PNNNISKKSR 300 LHHTSLHPNP TVAQPNNHSS PQFQGTGTIQ QLKDPQLLDA SIAFNSIFAS SCNYKESNRV 360 FGWAVDGEVM AANRVEQESL HLMDTRRREG LAPIRGYIYG TNASTLQQGY GEEGPLNLFS 420 YATEIAYPGG IHSRNDEYYH AFLNSDLIAS KQPQIDQHCP PRGFIDAWSN GDLKTIDESS 480 SVPSSKGYGL SPSSLTLSMA MAAGNALDEG MGLDEDSRPR MPTPKDSPVS WLPLIPGGPL 540 AEVLQPNSVA CGSNPASPYA SNGDSVSPPA TTVSSPTGIF QRALFSHSDG SVCNSPTLAA 600 SAAPPEVVAF QWLN

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS  60
QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV  120
TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG LGMAAASAAL GFPFTAVQWK  180
ELERQAMIYK YMIASVPVPS DLLLPADPTA APSVLLGGSH GGGGSIYNLR YGNRDLEPGR  240
CKRTDGKKWR CSRDVAPHQK YCERHMHRGR PRSRKPVEQL QSSSVSPDDN PNNNISKKSR  300
LHHTSLHPNP TVAQPNNHSS PQFQGTGTIQ QLKDPQLLDA SIAFNSIFAS SCNYKESNRV  360
FGWAVDGEVM AANRVEQESL HLMDTRRREG LAPIRGYIYG TNASTLQQGY GEEGPLNLFS  420
YATEIAYPGG IHSRNDEYYH AFLNSDLIAS KQPQIDQHCP PRGFIDAWSN GDLKTIDESS  480
SVPSSKGYGL SPSSLTLSMA MAAGNALDEG MGLDEDSRPR MPTPKDSPVS WLPLIPGGPL  540
AEVLQPNSVA CGSNPASPYA SNGDSVSPPA TTVSSPTGIF QRALFSHSDG SVCNSPTLAA  600
SAAPPEVVAF QWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	7e-35	GRF family protein