PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161488.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 294aa MW: 31192.1 Da PI: 9.5014

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	98	122	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC f C++Gd+C+FaHg XP_027161488.1 98 KTKLCTKFNTPEGCRFGDKCHFAHG 122 89**********************9 PP
2	zf-CCCH	26.6	1e-08	261	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C +f + G C +GdrC+FaH+ XP_027161488.1 261 YKSKMCENFPK-GSCTFGDRCHFAHS 285 89999****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MEFGGRKRER PDGAFTGNGG YKKSRDELES FTTGVGSKSK PCMKFFSTSG CQFGEGCHFL 60 HYVPGYSAHS QLANLGATPA VPGGRNVPFS DGPTLTVKTK LCTKFNTPEG CRFGDKCHFA 120 HGDMELGKSL APGYQDPRSM GPMGRLSGHF EPSPPGLGAA ASFGTSATAK ISIDASLAGA 180 IIGKNGVNSK HICRATGVKL SIKDHETDSN QRNIELEGSF DQIKQASGMV RELIANIGGP 240 TSRTSNTSGS FGRGVPPARQ YKSKMCENFP KGSCTFGDRC HFAHSASELR KPPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	9e-71	C3H family protein