PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161797.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 458aa MW: 50725.2 Da PI: 7.1458

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_027161797.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.3	4.2e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ XP_027161797.1 67 RGTFSLEEENLIIELHAVLGNR-WSQIAAKLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SLEEENLIIE LHAVLGNRWS QIAAKLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHQPIP EAENEEKGSA TSKNNEKTSE GSNDQLNYGE AAAESSEQKM AVEKPKPSSA 180 VTVDRYPLIE SNCNNMTTTP PPTHEFFLNR FLTSHESSNS SSKPPDLQDY FSFQQLNYGS 240 STNIGLSMNP NAPSFFNLTT SRSAEMVSDQ FNSAMSNSIM SAPSARMKPS ISLPSENNSL 300 GNFNVNKFPS WDACAISANN GSTSNASSSS IELQSNCSFF DNNGFSWGAA DCGKAEKDIV 360 HIHSSVGDTE DIKWTEYLQA PFLLSNSAAA TIQNQTAQDI YSAETKSGIS FTAPEGSVST 420 TTSWLQNHHH QQQPTIQAVA ELYNKHFQRL PAAFGQFS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNRWS QIAAKLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHQPIP EAENEEKGSA TSKNNEKTSE GSNDQLNYGE AAAESSEQKM AVEKPKPSSA  180
VTVDRYPLIE SNCNNMTTTP PPTHEFFLNR FLTSHESSNS SSKPPDLQDY FSFQQLNYGS  240
STNIGLSMNP NAPSFFNLTT SRSAEMVSDQ FNSAMSNSIM SAPSARMKPS ISLPSENNSL  300
GNFNVNKFPS WDACAISANN GSTSNASSSS IELQSNCSFF DNNGFSWGAA DCGKAEKDIV  360
HIHSSVGDTE DIKWTEYLQA PFLLSNSAAA TIQNQTAQDI YSAETKSGIS FTAPEGSVST  420
TTSWLQNHHH QQQPTIQAVA ELYNKHFQRL PAAFGQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-111	MYB family protein