PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027161867.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 313aa    MW: 34601 Da    PI: 7.3605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027161867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++++ G g+W++ +r  g+ R++k+c++rw +yl
   XP_027161867.1 15 KGPWTPEEDEKLIEYINKNGHGSWRSLPRNAGLLRCGKSCRLRWTNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding47.34.9e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_027161867.1  68 RGPFSPDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGRAPCCDKK MGLKKGPWTP EEDEKLIEYI NKNGHGSWRS LPRNAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FSPDEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICL  120
GIDPQTHEPC SNLSGLLQRL PASPSTRHMA QWESARLEAE ARLSKESLLF VPSSTGKSDS  180
DHILRIWNSE VGEAFRNFNK SQKIACESSI SQASSSTKCG SAASGTIAER SLCLAGPSVA  240
GVNQIEDTKC QSSRSAFEDI PPRSDSASSN DLEDSSESTL QLLLDFPGTN DMSFLATTDD  300
YMMYSANNEL NLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-122MYB family protein