PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161868.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 194aa MW: 21980.2 Da PI: 9.8799

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W++ +r g+ R++k+c++rw +yl XP_027161868.1 15 KGPWTPEEDEKLIEYINKNGHGSWRSLPRNAGLLRCGKSCRLRWTNYL 62 79****************************99**********97 PP
2	Myb_DNA-binding	48.3	2.3e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l XP_027161868.1 68 RGPFSPDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MGRAPCCDKK MGLKKGPWTP EEDEKLIEYI NKNGHGSWRS LPRNAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FSPDEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICL 120 GIDPQTHEPC SNLSGLLQRL PASPSTRHMA QWESARLEAE ARLSKESLLF VPSSTGKSDS 180 DHILRIWNSE LQAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-109	MYB family protein