PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161942.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 387aa MW: 43781.7 Da PI: 5.4165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_027161942.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_027161942.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGRSPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN SSIYSSSQQI NLSRLLGVQP MVNPELLRLA TSLFSSQKKN 180 HHDIPTQNDV QENQVVYTAP QVQNQLPPLI QPSELQTSVQ DIPTSDNLGT SLRTSTSCVP 240 FSCDQAQLMQ PNAEQFSSAN LSDFINSQQS CELNEWQNSE FLPPNFSEDY YVPLQHYGCY 300 GSDNQSVLDT APSETTSTFQ SNNSNSFSFQ SVLSTLSTPS SSPTPLQSNS TYINSCSTTT 360 TEDERESYCS NILKYEIPEL LDVNQFM

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGRSPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILN SSIYSSSQQI NLSRLLGVQP MVNPELLRLA TSLFSSQKKN  180
HHDIPTQNDV QENQVVYTAP QVQNQLPPLI QPSELQTSVQ DIPTSDNLGT SLRTSTSCVP  240
FSCDQAQLMQ PNAEQFSSAN LSDFINSQQS CELNEWQNSE FLPPNFSEDY YVPLQHYGCY  300
GSDNQSVLDT APSETTSTFQ SNNSNSFSFQ SVLSTLSTPS SSPTPLQSNS TYINSCSTTT  360
TEDERESYCS NILKYEIPEL LDVNQFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-100	MYB family protein