PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162239.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 175aa    MW: 19374.1 Da    PI: 7.3035
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.33.9e-4111109199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C ++C +apyf +++p+kfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l 
  XP_027162239.1  11 SCAACKFLKRRCIPNCQFAPYFRSDEPNKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQKKMVELQHDLL 105
                     6********************************************************************************************98 PP

          DUF260  96 llke 99 
                     l+k+
  XP_027162239.1 106 LAKA 109
                     8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MKNQEPRSSS SCAACKFLKR RCIPNCQFAP YFRSDEPNKF AKVHKVFGAS NVSKILNEVP  60
EEQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQKKMVEL QHDLLLAKAR LAYCATTKPA  120
PTSAIFLEGP SNIASNIDFP ASAGLELEEA FYHNSSVMGQ NANGWMNELG QFPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.16e-65LBD family protein