PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162315.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 291aa MW: 32644.7 Da PI: 6.4205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+ ++ ++G g+W+++a g+ R +k+c++rw +yl XP_027162315.1 15 KGLWSPDEDLKLKSYILKHGHGCWSSVAVNAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	46.5	8.3e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e ++ ++ +lG++ W+ a++++ gRt++++k++w++yl XP_027162315.1 68 RGMFSVEEEEAILTLHGMLGNK-WAQMAQHLP-GRTDNEIKNYWHSYL 113 7889****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MVCKHADKPK QKHKKGLWSP DEDLKLKSYI LKHGHGCWSS VAVNAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSVEEEEAIL TLHGMLGNKW AQMAQHLPGR TDNEIKNYWH SYLKKKVAKI 120 GETEAQAKAE KSSSASCLES SPSSMQSNPP TSTIESIEQL ESSLMSDAEQ SVSQSQMDLP 180 REACRSNLPR VLFAEWLSLD QFRDQNCESS GNPVVAKNNL VYYNSDFQDS FMHDLLLNEG 240 TFGGGNHQGL SNGAVDDILP PALKFEDQIL ENSFVDFING RFSLTSDDLY L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	1e-56	MYB family protein