PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162525.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 277aa MW: 31736.4 Da PI: 7.5049

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++ +++G g W+ ++ + g++R++k+c++rw++yl XP_027162525.1 9 KGAWTEEEDILLRKCMEKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	44.3	4.2e-14	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E +ll+++ k+lG++ W++Ia +++ gRt++++k++w+++l XP_027162525.1 62 RGDFASDEVDLLIRLQKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107 6778889*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MRNTDGLRKG AWTEEEDILL RKCMEKYGEG KWHQVPLRAG LNRCRKSCRL RWLNYLRPDI 60 KRGDFASDEV DLLIRLQKLL GNRWSLIAGR LPGRTANDVK NYWNTHLIKK MAFRRQPDEK 120 GQAGNTNYTT KPRASNIVKP RPWTFSKNAS WLRGKATTTT TTTASSSTEI PTIRTTTNAQ 180 GLKDSPPTSH PTIEKDDDNN MQWWDNLFLD EEGGEGTPLG FDASGEDNVT SLWFEELSQM 240 VFKEGDIWTQ ENQNGSGYSS TDADLWDFQI SDHQTMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	9e-68	MYB family protein