PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162565.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 334aa    MW: 36504 Da    PI: 6.098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_027162565.1 22 KGLWSPEEDEKLMNYMITNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding52.51.1e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
   XP_027162565.1  75 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MRKPDPIMGK DKGNNNKIKL RKGLWSPEED EKLMNYMITN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEELIVHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTI  120
KKRLKNNNAI TSTSSPNTSD SSDPRAIMLG GLMQPMQAEQ DVFSICMDSS SSSPPCMQAM  180
LSITQGNPFN PFPPLHDSAA YLDINGSASA AGAAGLYNLS AAHVGGGGGG SAGSLGDYGL  240
VEPYVMGLES DLSLPALEGR AFDNINAAND QSVLDKRLVH NNHHFNGNES IKVVDDFVGI  300
GNHWNGENLR MGELDWEGLL ANVSSLPYLD FQVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.15e-73MYB family protein