PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162588.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 350aa MW: 38741.4 Da PI: 8.0904

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l d+v+ +G g W++ a++ g++R++k+c++rw++yl XP_027162588.1 14 RGAWTPLEDKMLRDYVQSHGAGKWTSLAKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.6	4.3e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027162588.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRRPCCARE GLNRGAWTPL EDKMLRDYVQ SHGAGKWTSL AKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIVKKIQIQD 120 GQHLASSSST KRKPSSTRSR SAVLQNLTSA DKPPNSEKLG SFCTPVIRTK ARRCTKVFIN 180 AHLQASAGAE QGGIIMAVKA QAPPPSSDAK NNFNKTPTGH NNTVGPEPPS GGVKESLPIF 240 PGEEGYLSGF MMDFEIEEKF LLDFLNTDFG GFEHEFIERV AEGTNGETND EVGTAGVAQG 300 TNIETNDEAE ANHFSPNSCP RWLSHDDRNH ADLGSITTLL DPALVWHHDN

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRRPCCARE GLNRGAWTPL EDKMLRDYVQ SHGAGKWTSL AKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIVKKIQIQD  120
GQHLASSSST KRKPSSTRSR SAVLQNLTSA DKPPNSEKLG SFCTPVIRTK ARRCTKVFIN  180
AHLQASAGAE QGGIIMAVKA QAPPPSSDAK NNFNKTPTGH NNTVGPEPPS GGVKESLPIF  240
PGEEGYLSGF MMDFEIEEKF LLDFLNTDFG GFEHEFIERV AEGTNGETND EVGTAGVAQG  300
TNIETNDEAE ANHFSPNSCP RWLSHDDRNH ADLGSITTLL DPALVWHHDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	5e-58	MYB family protein