PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162589.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 283aa    MW: 31146.7 Da    PI: 6.2367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-0821432346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia +++ gRt++++k++w++
   XP_027162589.1 21 RWSLIAGRLP-GRTDNEIKNYWNT 43
                     5*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MCSRWANTYF YLICRDLTVV RWSLIAGRLP GRTDNEIKNY WNTNIVKKIQ IQDGQHLASS  60
SSTKRKPSST RSRSAVLQNL TSADKPPNSE KLGSFCTPVI RTKARRCTKV FINAHLQASA  120
GAEQGGIIMA VKAQAPPPSS DAKNNFNKTP TGHNNTVGPE PPSGGVKESL PIFPGEEGYL  180
SGFMMDFEIE EKFLLDFLNT DFGGFEHEFI ERVAEGTNGE TNDEVGTAGV AQGTNIETND  240
EAEANHFSPN SCPRWLSHDD RNHADLGSIT TLLDPALVWH HDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-11MYB family protein