PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162824.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 247aa    MW: 26440.2 Da    PI: 4.153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1672121155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++aa ++l+g
  XP_027162824.1  72 PHFRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDAATLALKG 121
                     689***6..668*********843...5*********************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MLESDQPNNS LRPDDPDPDD PPQPKEQPKP TGIIATASWS NTCECPPPPS QPSPSATIPS  60
PTGSSGPSRR HPHFRGVRSR SGKWVSEIRE PRKTTRIWLG TYPTPEMAAA AYDAATLALK  120
GPDAILNFPE LAPTYPIPAS LSAADVRAAA ASAAAAREPL QEPPVLDQAP ATSPRDPVEI  180
NEDVNASTSG DNQMGQDQFV DEEELFDMPN LLVDMAEGML VSPPRMKPAV SGESPENSDA  240
DNLWSYP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-46ERF family protein