PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162905.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 229aa MW: 24928.3 Da PI: 8.4906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.2	2.5e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vh++FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+ XP_027162905.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHRVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQSLQAELN 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027162905.1 140 AVRAE 144 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MSRERERLEE IGKKIKRESD VFSSQLGRRH MLGGDGGGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHRV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISTLQQQ VQSLQAELNA VRAEILQYRF RETSNINIHV PSNSNLALLS SGAVSIAALP 180 PTPPPPPPHL PPPPPSLPHT SPSSSMYSPP SSTAADFSTI SNENISFFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-80	LBD family protein