PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163090.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27691.8 Da PI: 9.9352

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.7	2.6e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifs tgkly+y+s XP_027163090.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSGTGKLYDYAS 59 8***********************************************86 PP
2	K-box	82.8	7.7e-28	82	170	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+a L+++++ Lq ++R+llGe+L Ls+++L qLe+qLe slk +R kK+++l+++i++l +k + l+een +L +k+ XP_027163090.1 82 PASEIKFWQREVASLRQQLHYLQDTHRKLLGEELFGLSVNDLVQLENQLEVSLKGVRVKKEQVLTDEIKQLHRKGNHLHEENIELYNKV 170 578899*******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSG TGKLYDYAST 60 SMKSIIERYN RMKEEHHRLL NPASEIKFWQ REVASLRQQL HYLQDTHRKL LGEELFGLSV 120 NDLVQLENQL EVSLKGVRVK KEQVLTDEIK QLHRKGNHLH EENIELYNKV NLIHQENIQL 180 QKKVQEQENI NKSHGSICTT NVTSNMNELH VPMNLQLSQP HAQKNEAPKN PMKLGLELY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	5e-97	MIKC_MADS family protein