PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163709.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 877aa MW: 103667 Da PI: 6.9275

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	231	250	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H XP_027163709.1 231 CPFHLKTGACRFGSRCSRVH 250 ******************99 PP
2	zf-CCCH	27	7.6e-09	360	387	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_027163709.1 360 WKVAICGEYMKSKlkTCSRGTACNFIHC 387 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence
MAEEEQEQGE EGIKDGCSMS EPSSAAAVAS ICRKEKRKAS KKEKRKQKRK EAAEKERQEE 60 EARLNDPEEQ LRLQLEEERE RERVERERRE FEERERLFLE ALARKKAQEE EEEEQRRIMT 120 EEELKLKENQ VGLETEANGE DEWEYIEDGL PEIIWQGNEI IVKKNKVKMK KKDAEQKWEE 180 DPDRPTSNPL PPQSEAFADF KSSSTVSAQQ LLENVAQQIP NFGTEQDKAH CPFHLKTGAC 240 RFGSRCSRVH FYPEISCTLL IKNMYNGPGL AWEHDEGLEY TEEEVERSYE EFYEDVHTEF 300 LKFGEIVNFK VCRNGSYHLR GNAYVHYREL DSAVLARRFI NGRYFAGKQV NCEFVGVTRW 360 KVAICGEYMK SKLKTCSRGT ACNFIHCFRN PGGDYEWADW EKPPPKYWVK RMAALFGYSH 420 ESGYDKWVEQ ETKGQRRNSS KSLIADEERY RSQRSLSREI KSSNCSPRDN YKEDKFRSKY 480 SKRYRSDDTK RLEVPDEREY EEERQSRSHQ RGKRRQYERE FDRAWLDEEK DADGYYYSTR 540 NTRESSRSPF RRRSQSHDCL EIDKRKIPEK ISRKNHALSG TANDSDCNKE ASACTDSGRD 600 FSHENKDCIS SRDLLYRRGA SDSDSAGDWS DWIIESRRVQ TRKSSARVDE AAGFSSDLQE 660 SGKSLHDKYD ENGSEHAKPN LHRGWRRTSS CKRKTRGDDY SDEDEDSDTR GHREIDKDDT 720 REHHRHNHSS RKTRKADYAD ENIDERGHWE TEKVDSREHH KHNRSGRKTS KADYADKHDE 780 DIDKRGCWEP EMVDAREYHK HNHSSRKTRK CDYAGEHHED IDKGGHWEPE KLDTREHHEH 840 RRKFHGRSGS HDQNVDKHSR KSRSSNQKRK SYSRERD

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence

MAEEEQEQGE EGIKDGCSMS EPSSAAAVAS ICRKEKRKAS KKEKRKQKRK EAAEKERQEE  60
EARLNDPEEQ LRLQLEEERE RERVERERRE FEERERLFLE ALARKKAQEE EEEEQRRIMT  120
EEELKLKENQ VGLETEANGE DEWEYIEDGL PEIIWQGNEI IVKKNKVKMK KKDAEQKWEE  180
DPDRPTSNPL PPQSEAFADF KSSSTVSAQQ LLENVAQQIP NFGTEQDKAH CPFHLKTGAC  240
RFGSRCSRVH FYPEISCTLL IKNMYNGPGL AWEHDEGLEY TEEEVERSYE EFYEDVHTEF  300
LKFGEIVNFK VCRNGSYHLR GNAYVHYREL DSAVLARRFI NGRYFAGKQV NCEFVGVTRW  360
KVAICGEYMK SKLKTCSRGT ACNFIHCFRN PGGDYEWADW EKPPPKYWVK RMAALFGYSH  420
ESGYDKWVEQ ETKGQRRNSS KSLIADEERY RSQRSLSREI KSSNCSPRDN YKEDKFRSKY  480
SKRYRSDDTK RLEVPDEREY EEERQSRSHQ RGKRRQYERE FDRAWLDEEK DADGYYYSTR  540
NTRESSRSPF RRRSQSHDCL EIDKRKIPEK ISRKNHALSG TANDSDCNKE ASACTDSGRD  600
FSHENKDCIS SRDLLYRRGA SDSDSAGDWS DWIIESRRVQ TRKSSARVDE AAGFSSDLQE  660
SGKSLHDKYD ENGSEHAKPN LHRGWRRTSS CKRKTRGDDY SDEDEDSDTR GHREIDKDDT  720
REHHRHNHSS RKTRKADYAD ENIDERGHWE TEKVDSREHH KHNRSGRKTS KADYADKHDE  780
DIDKRGCWEP EMVDAREYHK HNHSSRKTRK CDYAGEHHED IDKGGHWEPE KLDTREHHEH  840
RRKFHGRSGS HDQNVDKHSR KSRSSNQKRK SYSRERD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	49	KKEKRKQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-142	C3H family protein