PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163778.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 343aa MW: 37798.9 Da PI: 5.2706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.8e-14	167	212	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++K++iL A+eY+k+Lq XP_027163778.1 167 HIIAERKRREQLSQRFMALSAIVPGL-----KKMDKSSILGDAIEYLKHLQ 212 899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MEDPLSNDDF NIMDFLNDEL SAALADDFQN SSFPEGNPSF SNIFPSCNST PALCEPSVME 60 AHPVGFETPA KQHKTNGYNS SNIHNMPNFG QASSSPMILT FGNPNMPEIN PHQVTLVTLN 120 PEDDAVSEVL TSHGSFAKLD EAAKTTVQTK AKKPGGRVRP PSQTYDHIIA ERKRREQLSQ 180 RFMALSAIVP GLKKMDKSSI LGDAIEYLKH LQERVKTLEE KAARQTMESV VLVKRSQLLL 240 EDEGSSDEVA GPNEQPLPEF EAKVCDKNVL LRIHCKNYKG VLIKILSQID KLNLAVVNTC 300 VSPFGNFALD ITIIAEAEKE VNLTTKELVD TLRSVLQQGK HAA

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MEDPLSNDDF NIMDFLNDEL SAALADDFQN SSFPEGNPSF SNIFPSCNST PALCEPSVME  60
AHPVGFETPA KQHKTNGYNS SNIHNMPNFG QASSSPMILT FGNPNMPEIN PHQVTLVTLN  120
PEDDAVSEVL TSHGSFAKLD EAAKTTVQTK AKKPGGRVRP PSQTYDHIIA ERKRREQLSQ  180
RFMALSAIVP GLKKMDKSSI LGDAIEYLKH LQERVKTLEE KAARQTMESV VLVKRSQLLL  240
EDEGSSDEVA GPNEQPLPEF EAKVCDKNVL LRIHCKNYKG VLIKILSQID KLNLAVVNTC  300
VSPFGNFALD ITIIAEAEKE VNLTTKELVD TLRSVLQQGK HAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-53	bHLH family protein