PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163807.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 546aa MW: 59926.6 Da PI: 6.3032

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.2e-16	342	388	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_027163807.1 342 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 388 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MNHCVPDFEM DDDYGIPTSS SAASLIIAST TARPKKPAIG EEEIMELLWQ NGQVVFQSQN 60 QRSFKKSPNR GREPDQLHQS GASREIPSIL ENDNLSAPPP QQLFMQEDEM ASWLHYPLDD 120 SSFDRDLYSD LLYPPPPSAS TTMTPTPSAP PRELRTTVVE IRPPPAVIPP RPPVPPPSKR 180 TYPIEAAAPR LQNFMHFSRL PKSRNESGYT RELTVVDSNE TQKTVPESRV PEGDVRCGAV 240 SCTAAAATSA AARDLATTAC ELTVTSSSGA SGGSVSATAE PHHRPPTSIH KPSTSGEEDR 300 KRKGRETEET DCPSEDIEFE SADAKRQARG STSTKRSRAA EVHNLSERRR RDRINEKMRA 360 LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQLMSMGCGM LPMMYPSVQQ YMPAMGMGMG 420 MGMGMDLGMN RPVMPYPSLI PGSGMPSPAV AANMGPRFPM PAFHMQPVPV PDSSRIQASN 480 QLDPMLNSLV TPNPNQPRVP NFADPYQQFI GLHQAQIPLP QNQVVVQPSK PNSSREVGNL 540 DNHQSG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MNHCVPDFEM DDDYGIPTSS SAASLIIAST TARPKKPAIG EEEIMELLWQ NGQVVFQSQN  60
QRSFKKSPNR GREPDQLHQS GASREIPSIL ENDNLSAPPP QQLFMQEDEM ASWLHYPLDD  120
SSFDRDLYSD LLYPPPPSAS TTMTPTPSAP PRELRTTVVE IRPPPAVIPP RPPVPPPSKR  180
TYPIEAAAPR LQNFMHFSRL PKSRNESGYT RELTVVDSNE TQKTVPESRV PEGDVRCGAV  240
SCTAAAATSA AARDLATTAC ELTVTSSSGA SGGSVSATAE PHHRPPTSIH KPSTSGEEDR  300
KRKGRETEET DCPSEDIEFE SADAKRQARG STSTKRSRAA EVHNLSERRR RDRINEKMRA  360
LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQLMSMGCGM LPMMYPSVQQ YMPAMGMGMG  420
MGMGMDLGMN RPVMPYPSLI PGSGMPSPAV AANMGPRFPM PAFHMQPVPV PDSSRIQASN  480
QLDPMLNSLV TPNPNQPRVP NFADPYQQFI GLHQAQIPLP QNQVVVQPSK PNSSREVGNL  540
DNHQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	6e-53	bHLH family protein