PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164012.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 260aa MW: 28062.1 Da PI: 4.3489

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	171	195	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+G ++V+C++C+tV XP_027164012.1 171 CGSCRLLLAYPPGVKYVQCSCCQTV 195 ************************9 PP
2	zf-LSD1	36.5	8.3e-12	209	233	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC +C V XP_027164012.1 209 CGGCAVLLMYPYGAPSVRCCSCRSV 233 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MGTEEKDLVK GGGGGGEEDD DDDDGPPPGF HCIATQIEEN LVKEEKDAEI NENEDDEDED 60 VDGPPPGWSS IPPATFQPVH PSDVEMSDKQ KEDENEEGPP PGWHSVPLAS QSSEAVPADT 120 QTRNHEDRTK YIDEGSQPGQ KSVPPLKLLP PTPPRPPPAV SSPSEKGQMV CGSCRLLLAY 180 PPGVKYVQCS CCQTVNLVLE DHQVGQVKCG GCAVLLMYPY GAPSVRCCSC RSVTEIGAHN 240 RRPPLSVQQA RRPLSVNRVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-36	LSD family protein