PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164729.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 344aa MW: 38924.1 Da PI: 7.2171

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.8e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_027164729.1 42 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 89 89********************************************97 PP
2	Myb_DNA-binding	51.1	3e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027164729.1 95 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDHVKGGGRV CNQQQLQQQQ ISASSTTIAD QEDMMMIMDL RRGPWTVEED FTLINYIAHH 60 GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI 120 AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAAGA 180 DSSTAARATA ATATTTSNSN YHQGNTSMVA DVGSAGQVIL PQASTYGGRV TMNPSRSTSY 240 TPENSSTPAS SDSFTAQFSP VSDLTDCYNY PVKQSNNQDY YQANNQLSYG ETLTSPTGYF 300 NQALDFHLME QNNAWMDGGD VSDNLWNDED AWFFQQQLNS NTFN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDHVKGGGRV CNQQQLQQQQ ISASSTTIAD QEDMMMIMDL RRGPWTVEED FTLINYIAHH  60
GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI  120
AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAAGA  180
DSSTAARATA ATATTTSNSN YHQGNTSMVA DVGSAGQVIL PQASTYGGRV TMNPSRSTSY  240
TPENSSTPAS SDSFTAQFSP VSDLTDCYNY PVKQSNNQDY YQANNQLSYG ETLTSPTGYF  300
NQALDFHLME QNNAWMDGGD VSDNLWNDED AWFFQQQLNS NTFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-89	MYB family protein