PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164987.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 226aa MW: 25430 Da PI: 6.3947

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.7e-56	49	152	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl XP_027164987.1 49 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 143 89****9999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_027164987.1 144 VDIVPREDL 152 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MMGLSPSASA GPVQAPQTAG LPASSTQMAQ HQLAYQHIHQ QQQQQLQQQL QNFWANQYQE 60 IEQVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRAWNHTEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKEEMLASI PRGPLPVGGP AEGVPYYYMS 180 AQSAPPVGAP GMYMGKPVDQ ALYGHQPRPY MPQQMWPHQQ QPPADS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	2e-81	NF-YC family protein